h5py==3.8.0
numpy==1.24.2
biopython==1.80
biotite==0.35.0
brotlipy==0.7.0
obonet==0.3.1
pickle5==0.0.11
seaborn==0.12.2
subword-nmt==0.3.8
tensorboardX==2.5.1
tensorflow==2.11.0
tensorflow-estimator==2.11.0
tfrecord==1.14.1
tokenizers==0.13.2
transformers==4.26.0
wget==3.2
wrapt==1.14.1
gemmi==0.5.8
scikit-learn==1.2.1
torch==1.13.1
torchaudio==0.13.1
torchvision==0.14.1
fair-esm[esmfold]
# OpenFold and its remaining dependency
dllogger @ git+https://github.com/NVIDIA/dllogger.git
pymysql==0.10.1
statsmodels==0.14.0
pynvml==11.5.0
rdkit==2023.9.4
timm==0.9.12
fire==0.5.0
peft==0.8.2
openpyxl==3.1.2